1: * using log directory ‘/home/bolker/lme4check2/check/agridat.Rcheck’
2: * using R Under development (unstable) (2015-06-08 r68489)
3: * using platform: x86_64-unknown-linux-gnu (64-bit)
4: * using session charset: UTF-8
5: * checking for file ‘agridat/DESCRIPTION’ ... OK
6: * checking extension type ... Package
7: * this is package ‘agridat’ version ‘1.11’
8: * checking package namespace information ... OK
9: * checking package dependencies ... OK
10: * checking if this is a source package ... OK
11: * checking if there is a namespace ... OK
12: * checking for executable files ... OK
13: * checking for hidden files and directories ... OK
14: * checking for portable file names ... OK
15: * checking for sufficient/correct file permissions ... OK
16: * checking whether package ‘agridat’ can be installed ... OK
17: * checking installed package size ... OK
18: * checking package directory ... OK
19: * checking ‘build’ directory ... OK
20: * checking DESCRIPTION meta-information ... OK
21: * checking top-level files ... OK
22: * checking for left-over files ... OK
23: * checking index information ... OK
24: * checking package subdirectories ... OK
25: * checking R files for non-ASCII characters ... OK
26: * checking R files for syntax errors ... OK
27: * checking whether the package can be loaded ... OK
28: * checking whether the package can be loaded with stated dependencies ... OK
29: * checking whether the package can be unloaded cleanly ... OK
30: * checking whether the namespace can be loaded with stated dependencies ... OK
31: * checking whether the namespace can be unloaded cleanly ... OK
32: * checking loading without being on the library search path ... OK
33: * checking dependencies in R code ... OK
34: * checking S3 generic/method consistency ... OK
35: * checking replacement functions ... OK
36: * checking foreign function calls ... OK
37: * checking R code for possible problems ... OK
38: * checking Rd files ... OK
39: * checking Rd metadata ... OK
40: * checking Rd cross-references ... OK
41: * checking for missing documentation entries ... OK
42: * checking for code/documentation mismatches ... OK
43: * checking Rd \usage sections ... OK
44: * checking Rd contents ... OK
45: * checking for unstated dependencies in examples ... OK
46: * checking contents of ‘data’ directory ... OK
47: * checking data for non-ASCII characters ... OK
48: * checking data for ASCII and uncompressed saves ... OK
49: * checking sizes of PDF files under ‘inst/doc’ ... OK
50: * checking installed files from ‘inst/doc’ ... OK
51: * checking files in ‘vignettes’ ... OK
52: * checking examples ... OK
53: * checking for unstated dependencies in vignettes ... OK
54: * checking package vignettes in ‘inst/doc’ ... OK
55: * checking running R code from vignettes ...
56:    ‘agridat_examples.Rnw’ ... OK
57:  OK
58: * checking re-building of vignette outputs ... OK
59: * checking PDF version of manual ... OK
60: * DONE
61: Status: OK