* using log directory ‘/home/bolker/lme4check2/check/DAAG.Rcheck’
* using R Under development (unstable) (2015-06-08 r68489)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘DAAG/DESCRIPTION’ ... OK
* this is package ‘DAAG’ version ‘1.20’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘DAAG’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... NOTE
'library' or 'require' calls in package code:
‘MASS’ ‘leaps’ ‘quantreg’ ‘randomForest’ ‘rpart’ ‘stats’
Please use :: or requireNamespace() instead.
See section 'Suggested packages' in the 'Writing R Extensions' manual.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
CVlm: no visible binding for global variable ‘houseprices’
bestset.noise: no visible global function definition for ‘regsubsets’
bestsetNoise: no visible global function definition for ‘regsubsets’
bsnCV: no visible global function definition for ‘regsubsets’
bsnOpt: no visible global function definition for ‘regsubsets’
bsnVaryNvar: no visible global function definition for ‘rq’
compareTreecalcs: no visible binding for global variable ‘spam7’
compareTreecalcs: no visible global function definition for ‘rpart’
compareTreecalcs: no visible global function definition for ‘prune’
compareTreecalcs: no visible global function definition for
‘randomForest’
cv.lm: no visible binding for global variable ‘houseprices’
datafile: no visible binding for global variable ‘DAAGxdb’
datafile: no visible binding for global variable ‘zzDAAGxdb’
errorsINseveral : <anonymous>: no visible global function definition
for ‘panel.xyplot’
errorsINseveral : <anonymous>: no visible global function definition
for ‘panel.abline’
errorsINx: no visible global function definition for ‘strip.custom’
errorsINx : <anonymous>: no visible global function definition for
‘panel.xyplot’
errorsINx : <anonymous>: no visible global function definition for
‘panel.abline’
errorsINx : <anonymous>: no visible global function definition for
‘panel.superpose’
errorsINx : <anonymous>: no visible global function definition for
‘panel.arrows’
errorsINx : <anonymous>: no visible global function definition for
‘panel.text’
excessRisk: no visible binding for global variable ‘nassCDS’
multilap: no visible binding for global variable ‘nsw74psid1’
onet.permutation: no visible binding for global variable ‘pair65’
onetPermutation: no visible binding for global variable ‘pair65’
plotSimDiags: no visible global function definition for ‘panel.abline’
plotSimDiags: no visible global function definition for ‘qqmath’
plotSimDiags: no visible binding for global variable
‘prepanel.qqmathline’
plotSimDiags : <anonymous>: no visible global function definition for
‘panel.qqmathline’
plotSimDiags : <anonymous>: no visible global function definition for
‘panel.qqmath’
plotSimDiags : panel5.diag: no visible global function definition for
‘panel.xyplot’
plotSimDiags : panel5.diag: no visible global function definition for
‘panel.abline’
plotSimDiags : yscale.cpts: no visible global function definition for
‘yscale.components.default’
plotSimDiags : panel6: no visible global function definition for
‘panel.xyplot’
plotSimDiags : panel6: no visible global function definition for
‘panel.abline’
plotSimDiags : panel6: no visible global function definition for
‘panel.text’
plotSimDiags : panel6: no visible global function definition for
‘panel.lines’
qreference: no visible global function definition for ‘qqmath’
sampdist: no visible global function definition for ‘densityplot’
sampdist : <anonymous>: no visible global function definition for
‘panel.densityplot’
sampdist: no visible global function definition for ‘strip.custom’
sampdist: no visible global function definition for ‘qqmath’
sampdist : <anonymous>: no visible global function definition for
‘panel.qqmath’
show.colors : classify.colors: no visible global function definition
for ‘lda’
twot.permutation: no visible binding for global variable ‘two65’
twotPermutation: no visible binding for global variable ‘two65’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE
Status: 2 NOTEs